Index

Symbols

--all-by-all biomappings-predict-lexical command line option --cache biomappings-predict-lexical command line option --cutoff biomappings-predict-lexical command line option --eager-persist biomappings-web command line option --filter-mutual-mappings biomappings-predict-lexical command line option --force biomappings-predict-lexical command line option --force-process biomappings-predict-lexical command line option --host biomappings-web command line option --identifiers-are-names biomappings-predict-lexical command line option --image-directory biomappings-summarize command line option --implementation biomappings-web command line option --instance biomappings-import-ontoportal command line option --live-login biomappings-web command line option --method biomappings-predict-lexical command line option --no-cache biomappings-predict-lexical command line option --no-open biomappings-web command line option --orcid biomappings-web command line option --orcid-client-id biomappings-web command line option

--orcid-client-secret biomappings-web command line option --output-directory biomappings-summarize command line option --password biomappings-ndex command line option --pin-version biomappings-predict-lexical command line option --port biomappings-web command line option --prefixes biomappings-import-semra command line option --proxy-fix biomappings-web command line option --relation biomappings-predict-lexical command line option --resolver-base biomappings-web command line option --ssl-certfile biomappings-web command line option --ssl-keyfile biomappings-web command line option --sssom-directory biomappings-merge command line option --strategy biomappings-lint command line option biomappings-test command line option --username biomappings-ndex command line option --verbose biomappings-predict-lexical command line option -p biomappings-import-semra command line option -pv biomappings-predict-lexical command line option -v biomappings-predict-lexical command line option

A

append_false_mappings() (in module biomappings.resources)

append_predictions() (in module biomappings.resources) append_true_mappings() (in module biomappings.resources)

B

biomappings module biomappings-import-ontoportal command line option --instance ONTOLOGY_1 ONTOLOGY_2 biomappings-import-semra command line option --prefixes -p biomappings-import-url command line option URL biomappings-lint command line option --strategy biomappings-merge command line option --sssom-directory biomappings-ndex command line option --password --username biomappings-predict-lexical command line option --all-by-all --cache --cutoff --filter-mutual-mappings --force --force-process --identifiers-are-names --method --no-cache --pin-version --relation --verbose -pv -v SOURCE_PREFIX TARGET_PREFIX

biomappings-summarize command line option --image-directory --output-directory biomappings-test command line option --strategy biomappings-web command line option --eager-persist --host --implementation --live-login --no-open --orcid --orcid-client-id --orcid-client-secret --port --proxy-fix --resolver-base --ssl-certfile --ssl-keyfile biomappings.resources module biomappings.utils module

G

get_curator_names() (in module biomappings.resources) get_current_curator() (in module biomappings.resources)

get_script_url() (in module biomappings.utils) get_true_graph() (in module biomappings.resources)

L

load_curators() (in module biomappings.resources) load_false_mappings() (in module biomappings.resources) load_mappings() (in module biomappings.resources)

load_positive_mappings() (in module biomappings.resources) load_predictions() (in module biomappings.resources) load_unsure() (in module biomappings.resources)

M

module biomappings biomappings.resources biomappings.utils

O

ONTOLOGY_1 biomappings-import-ontoportal command line option

ONTOLOGY_2 biomappings-import-ontoportal command line option

R

read_mappings() (in module biomappings.resources)

S

SOURCE_PREFIX biomappings-predict-lexical command line option

T

TARGET_PREFIX biomappings-predict-lexical command line option

U

URL biomappings-import-url command line option