Index

Symbols

--negatives-path biomappings-web command line option --password biomappings-ndex command line option --path biomappings-curate command line option --positives-path biomappings-web command line option --predictions-path biomappings-web command line option

--standardize biomappings-lint command line option --unsure-path biomappings-web command line option --username biomappings-ndex command line option --version biomappings command line option

A

append_gilda_predictions() (in module biomappings.gilda_utils)

B

biomappings module biomappings command line option --version biomappings-curate command line option --path biomappings-lint command line option --standardize biomappings-ndex command line option --password --username

biomappings-prune command line option PREFIXES biomappings-web command line option --negatives-path --positives-path --predictions-path --unsure-path biomappings.gilda_utils module biomappings.utils module

C

check_valid_prefix_id() (in module biomappings.utils)

CMapping (in module biomappings.utils) commit() (in module biomappings.utils)

F

filter_custom() (in module biomappings.gilda_utils)

filter_existing_xrefs() (in module biomappings.gilda_utils)

G

get_branch() (in module biomappings.utils) get_canonical_tuple() (in module biomappings.utils)

get_curie() (in module biomappings.utils) get_git_hash() (in module biomappings.utils) get_script_url() (in module biomappings.utils)

H

has_mapping() (in module biomappings.gilda_utils)

I

InvalidIdentifier InvalidIdentifierPattern

InvalidNormIdentifier iter_prediction_tuples() (in module biomappings.gilda_utils)

M

module biomappings biomappings.gilda_utils biomappings.utils

N

not_main() (in module biomappings.utils)

P

PREFIXES biomappings-prune command line option

push() (in module biomappings.utils)

U

UnregisteredPrefix

UnstandardizedPrefix