append_gilda_predictions

append_gilda_predictions(prefix: str, target_prefixes: str | Iterable[str], provenance: str, *, relation: str = 'skos:exactMatch', custom_filter: Mapping[str, Mapping[str, Mapping[str, str]]] | None = None, unnamed: Iterable[str] | None = None, identifiers_are_names: bool = False, path: Path | None = None) → None[source]

Add gilda predictions to the Biomappings predictions.tsv file.

Parameters:

  • prefix – The source prefix

  • target_prefixes – The target prefix or prefixes

  • provenance – The provenance text. Typically generated with biomappings.utils.get_script_url(__file__).

  • relation – The relationship. Defaults to skos:exactMatch.

  • custom_filter – A triple nested dictionary from source prefix to target prefix to source id to target id. Any source prefix, target prefix, source id combinations in this dictionary will be filtered.

  • unnamed – An optional list of prefixes whose identifiers should be considered as names (e.g., CCLE, FPLX)

  • identifiers_are_names – The source prefix’s identifiers should be considered as names

  • path – A custom path to predictions TSV file