Biomappings 0.3.7-dev Documentation
Community curated mappings between biomedical entities.
Installation
The most recent release can be installed from PyPI with:
$ pip install biomappings
The most recent code and data can be installed directly from GitHub with:
$ pip install git+https://github.com/biopragmatics/biomappings.git
To install in development mode, use the following:
$ git clone git+https://github.com/biopragmatics/biomappings.git
$ cd biomappings
$ pip install -e .
Table of Contents
Getting Started
- Usage
append_gilda_predictions()iter_prediction_tuples()filter_custom()filter_existing_xrefs()has_mapping()get_git_hash()commit()push()not_main()get_branch()get_script_url()get_canonical_tuple()UnregisteredPrefixUnstandardizedPrefixInvalidIdentifierInvalidIdentifierPatternInvalidNormIdentifiercheck_valid_prefix_id()get_curie()CMapping
- Command Line Interface