Biomappings 0.3.7-dev Documentation
Community curated mappings between biomedical entities.
Installation
The most recent release can be installed from PyPI with:
$ pip install biomappings
The most recent code and data can be installed directly from GitHub with:
$ pip install git+https://github.com/biopragmatics/biomappings.git
To install in development mode, use the following:
$ git clone git+https://github.com/biopragmatics/biomappings.git
$ cd biomappings
$ pip install -e .
Table of Contents
Getting Started
- Usage
append_gilda_predictions()
iter_prediction_tuples()
filter_custom()
filter_existing_xrefs()
has_mapping()
get_git_hash()
commit()
push()
not_main()
get_branch()
get_script_url()
get_canonical_tuple()
UnregisteredPrefix
UnstandardizedPrefix
InvalidIdentifier
InvalidIdentifierPattern
InvalidNormIdentifier
check_valid_prefix_id()
get_curie()
CMapping
- Command Line Interface