biomappings
stable
Getting Started
Reference
Command Line Interface
Adding Predictions
Deploying a Custom Biomappings Instance
biomappings
Index
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Index
Symbols
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A
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B
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C
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F
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G
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H
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I
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M
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P
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S
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T
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U
Symbols
--negatives-path
biomappings-web command line option
--password
biomappings-ndex command line option
--path
biomappings-curate command line option
--positives-path
biomappings-web command line option
--predictions-path
biomappings-web command line option
--standardize
biomappings-lint command line option
--unsure-path
biomappings-web command line option
--username
biomappings-ndex command line option
--version
biomappings command line option
A
append_gilda_predictions() (in module biomappings.gilda_utils)
assert_canonical_identifier() (IntegrityTestCase method)
assert_no_internal_redundancies() (IntegrityTestCase method)
B
biomappings
module
biomappings command line option
--version
biomappings-curate command line option
--path
biomappings-lint command line option
--standardize
biomappings-ndex command line option
--password
--username
biomappings-prune command line option
PREFIXES
biomappings-web command line option
--negatives-path
--positives-path
--predictions-path
--unsure-path
biomappings.gilda_utils
module
biomappings.testing
module
biomappings.utils
module
C
check_valid_prefix_id() (in module biomappings.utils)
F
filter_custom() (in module biomappings.gilda_utils)
filter_existing_xrefs() (in module biomappings.gilda_utils)
G
get_canonical_tuple() (in module biomappings.utils)
get_curie() (in module biomappings.utils)
get_git_hash() (in module biomappings.utils)
get_script_url() (in module biomappings.utils)
H
has_mapping() (in module biomappings.gilda_utils)
I
IntegrityTestCase (class in biomappings.testing)
InvalidIdentifier
InvalidIdentifierPattern
InvalidNormIdentifier
iter_prediction_tuples() (in module biomappings.gilda_utils)
M
module
biomappings
biomappings.gilda_utils
biomappings.testing
biomappings.utils
P
PathIntegrityTestCase (class in biomappings.testing)
PREFIXES
biomappings-prune command line option
S
setUpClass() (PathIntegrityTestCase class method)
T
test_canonical_prefixes() (IntegrityTestCase method)
test_contributors() (IntegrityTestCase method)
test_cross_redundancy() (IntegrityTestCase method)
test_curations_sorted() (IntegrityTestCase method)
test_false_mappings_sorted() (IntegrityTestCase method)
test_normalized_identifiers() (IntegrityTestCase method)
test_prediction_types() (IntegrityTestCase method)
test_predictions_sorted() (IntegrityTestCase method)
test_relations() (IntegrityTestCase method)
test_unsure_sorted() (IntegrityTestCase method)
U
UnregisteredPrefix
UnstandardizedPrefix
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